PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ciclev10031880m
Common NameCICLE_v10031052mg
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
Family G2-like
Protein Properties Length: 370aa    MW: 40820.8 Da    PI: 5.819
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ciclev10031880mgenomeICGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like38.92e-1211382855
          G2-like 28 tPktilelmkvkgLtlehvkSHLQkYRl 55
                      Pk+il+lm+v+ Lt+e+v+SHLQkYRl
  Ciclev10031880m 11 GPKKILDLMNVPWLTRENVASHLQKYRL 38
                     5**************************8 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.603.4E-131043IPR009057Homeodomain-like
TIGRFAMsTIGR015571.5E-101038IPR006447Myb domain, plants
SuperFamilySSF466891.56E-61142IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000160Biological Processphosphorelay signal transduction system
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009735Biological Processresponse to cytokinin
GO:0010082Biological Processregulation of root meristem growth
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 370 aa     Download sequence    Send to blast
MTCSVCLAEV GPKKILDLMN VPWLTRENVA SHLQKYRLYL TRLQKDELKT SVGGIKQKDS  60
PSKDSAASFG IQNSITVHHH NDVSNGGYRF SGSNSVVQNV DAKSLEGDVK GIDTIPVTGH  120
KRVLTVDIPN SHKARCSQIG FSGSFVPGHS DVNFTSLDSA IPTQPWSEVS ETQFQHEHKP  180
LRLENDFTQL PLPGPRHHIQ VDCIQSGPSA ISKPSVVDKD NLKPFDCTYK SNHPNAIPIG  240
SAVDTFPVQT TSPIVNHQPF EPIARTTSSM KSQGLNLSCI PDLEAAQRNI NWGVGSSLTS  300
LDEDLQLCWL QGDCFAMNLG LQDINFSEYN DPALNSEVPF HLYDTMRFDY EHYYDPTECP  360
IIDQGLFIA*
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00010PBMTransfer from AT1G67710Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006438145.10.0hypothetical protein CICLE_v10031052mg
TrEMBLV4TIC40.0V4TIC4_9R
STRINGVIT_01s0010g02230.t011e-122(Vitis vinifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G67710.13e-43response regulator 11